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Periplasmic domain of the outer membrane secretin EscC from enteropathogenic E.coli (EPEC)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch, 2.0 M Ammonium sulfate + 0.1 M sodium acetate pH 4.5 or Bis-Tris pH 6.5
Crystal Properties Matthews coefficient Solvent content 4.43 72.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.645 α = 90 b = 90.645 β = 90 c = 133.422 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 18.7 100 20942
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 18.7 20941 1072 99.79 0.215 0.213 0.251 0.2185 RANDOM 42.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.23 -0.11 -0.23 0.34
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.198 r_dihedral_angle_1_deg 6.576 r_scbond_it 4.355 r_mcangle_it 3.242 r_angle_refined_deg 2.102 r_mcbond_it 1.763 r_angle_other_deg 0.983 r_symmetry_vdw_refined 0.314 r_symmetry_vdw_other 0.314 r_symmetry_hbond_refined 0.293
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.198 r_dihedral_angle_1_deg 6.576 r_scbond_it 4.355 r_mcangle_it 3.242 r_angle_refined_deg 2.102 r_mcbond_it 1.763 r_angle_other_deg 0.983 r_symmetry_vdw_refined 0.314 r_symmetry_vdw_other 0.314 r_symmetry_hbond_refined 0.293 r_nbd_other 0.251 r_nbd_refined 0.231 r_xyhbond_nbd_refined 0.171 r_chiral_restr 0.142 r_nbtor_other 0.092 r_bond_refined_d 0.032 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1237 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction