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Periplasmic domain of the T3SS inner membrane protein PrgH from S.typhimurium (fragment 170-362)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 30% (w/v) PEG 1500 + 0.1M lithium sulfate + 0.1M Tris 8.5 + 0.109M octanoyl-n-hydroxyethylglucamide, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.52 51.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.257 α = 90 b = 53.257 β = 90 c = 282.527 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 35 99.52 39588
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 35 39588 2006 99.52 0.208 0.206 0.2003 0.255 0.2465 RANDOM 23.526
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 0.62 1.24 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.269 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_3_deg 17.45 r_dihedral_angle_1_deg 5.58 r_scangle_it 3.169 r_scbond_it 1.99 r_angle_refined_deg 1.328 r_mcangle_it 1.242 r_mcbond_it 0.761 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.269 r_dihedral_angle_4_deg 20.375 r_dihedral_angle_3_deg 17.45 r_dihedral_angle_1_deg 5.58 r_scangle_it 3.169 r_scbond_it 1.99 r_angle_refined_deg 1.328 r_mcangle_it 1.242 r_mcbond_it 0.761 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.231 r_nbd_refined 0.197 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.086 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6080 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction SCALA data scaling SHARP phasing