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Crystal structure of Cell Inhibiting Factor (Cif) from Photorhabdus luminescens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 291 100 mM tri-Sodium Citrate pH 6.2, 2.45 M Ammonium Sulfate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.49 50.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.13 α = 90 b = 59.13 β = 90 c = 293.17 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.972 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 41.96 97.2 0.095 19.3 12 26540 26540 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 88.1 0.387 4.4 8.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 38.58 25084 1338 97.05 0.22819 0.22585 0.209 0.2736 0.2531 RANDOM 21.16
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.26 0.63 1.26 -1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.362 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 13.827 r_dihedral_angle_1_deg 5.337 r_scangle_it 3.562 r_scbond_it 2.048 r_mcangle_it 1.32 r_angle_refined_deg 1.254 r_mcbond_it 0.718 r_chiral_restr 0.094
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.362 r_dihedral_angle_4_deg 19.141 r_dihedral_angle_3_deg 13.827 r_dihedral_angle_1_deg 5.337 r_scangle_it 3.562 r_scbond_it 2.048 r_mcangle_it 1.32 r_angle_refined_deg 1.254 r_mcbond_it 0.718 r_chiral_restr 0.094 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1975 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 17
Software Software Software Name Purpose ADSC data collection MLPHARE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling