☰ Navigation Tabs
Structure of the trimeric form of the E113G PCNA mutant protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PLQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 298 2.0 M ammonium sulfate and 0.1 M sodium citrate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 5.25 76.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.093 α = 90 b = 122.093 β = 90 c = 122.093 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 saggital focusing mirrors 2008-01-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 0.97 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 29.62 99.57 0.072 17.9 10.56 6194 6146 92.254
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.8 3.903 99.57 0.294 0.294 6.8 9.84 439
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1PLQ 3.8 29.62 0.02 6187 5860 282 99.22 0.27531 0.27331 0.3378 0.31215 0.3101 RANDOM 92.254
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.99 r_dihedral_angle_4_deg 21.184 r_dihedral_angle_3_deg 21.069 r_dihedral_angle_1_deg 7.225 r_angle_refined_deg 1.376 r_scangle_it 1.32 r_mcangle_it 1.01 r_scbond_it 0.764 r_mcbond_it 0.555 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.99 r_dihedral_angle_4_deg 21.184 r_dihedral_angle_3_deg 21.069 r_dihedral_angle_1_deg 7.225 r_angle_refined_deg 1.376 r_scangle_it 1.32 r_mcangle_it 1.01 r_scbond_it 0.764 r_mcbond_it 0.555 r_nbtor_refined 0.314 r_nbd_refined 0.239 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.154 r_chiral_restr 0.097 r_bond_refined_d 0.011 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1990 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling