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HCV NS5b polymerase in complex with 1,5 benzodiazepine inhibitor (R)-11d
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.75 293 5-8% PEG 6000, 100mM Mg-Salts, pH 6.75, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.94 58.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.048 α = 90 b = 106.62 β = 90 c = 134.679 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97630 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 41.81 99.6 0.162 10.5 4.1 36205 36205
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.85 2.95 99.5 0.501 3.3 4.2 3510
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 41.81 34394 34394 1811 99.64 0.19133 0.19133 0.1883 0.2223 0.2503 0.275 RANDOM 33.615
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.61 -0.56 -3.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.591 r_dihedral_angle_3_deg 19.038 r_dihedral_angle_4_deg 17.803 r_dihedral_angle_1_deg 6.608 r_scangle_it 6.16 r_scbond_it 4.111 r_mcangle_it 2.708 r_mcbond_it 2.003 r_angle_refined_deg 1.341 r_angle_other_deg 0.785
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.591 r_dihedral_angle_3_deg 19.038 r_dihedral_angle_4_deg 17.803 r_dihedral_angle_1_deg 6.608 r_scangle_it 6.16 r_scbond_it 4.111 r_mcangle_it 2.708 r_mcbond_it 2.003 r_angle_refined_deg 1.341 r_angle_other_deg 0.785 r_mcbond_other 0.372 r_nbd_refined 0.22 r_symmetry_vdw_other 0.201 r_nbtor_refined 0.184 r_nbd_other 0.182 r_symmetry_vdw_refined 0.167 r_xyhbond_nbd_refined 0.162 r_symmetry_hbond_refined 0.145 r_nbtor_other 0.088 r_metal_ion_refined 0.079 r_chiral_restr 0.071 r_xyhbond_nbd_other 0.021 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8695 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 62
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling