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Structure of STRAD and MO25
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UPK PDB ENTRIES 1UPK AND 1U5R experimental model PDB 1U5R PDB ENTRIES 1UPK AND 1U5R
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.4 293 0.1 M MES pH 6.4, 10% PEG8000, 0.25 microL of 1 M NDSB-256, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.45 49.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.678 α = 90 b = 82.874 β = 90 c = 134.292 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2007-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 20 99.6 0.01 13.4 5.5 34668 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.48 99.9 0.617 2.9 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 1UPK AND 1U5R 2.35 19.82 2 33712 902 99.5 0.207 0.206 0.254 0.2769 RANDOM 28.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.93 -0.28 -2.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.767 r_dihedral_angle_3_deg 17.585 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_1_deg 5.942 r_scangle_it 4.452 r_scbond_it 3.042 r_mcangle_it 1.685 r_angle_refined_deg 1.277 r_mcbond_it 1.063 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.767 r_dihedral_angle_3_deg 17.585 r_dihedral_angle_4_deg 17.295 r_dihedral_angle_1_deg 5.942 r_scangle_it 4.452 r_scbond_it 3.042 r_mcangle_it 1.685 r_angle_refined_deg 1.277 r_mcbond_it 1.063 r_nbtor_refined 0.298 r_symmetry_hbond_refined 0.207 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.12 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5202 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 44
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling