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Crystal structure of a protein of unknown function from Methanocaldococcus jannaschii
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 0.2M Lithium chloride, 0.05M Magnesium sulfate, 8% PEG 8000, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.68 54.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.935 α = 90 b = 73.988 β = 90 c = 85.024 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 Mirrors 2008-06-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9794 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 55.81 99.1 0.116 17.3 8.4 33730 33426 1.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 89.71 0.66 1.27 4.5 2546
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.91 55.81 33426 1768 99.1 0.1756 0.17388 0.1828 0.20858 0.2143 RANDOM 14.353
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 -0.41 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.266 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 14.585 r_dihedral_angle_1_deg 5.512 r_scangle_it 5.126 r_scbond_it 3.157 r_mcangle_it 1.738 r_angle_refined_deg 1.643 r_angle_other_deg 0.92 r_mcbond_it 0.897
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.266 r_dihedral_angle_4_deg 17.702 r_dihedral_angle_3_deg 14.585 r_dihedral_angle_1_deg 5.512 r_scangle_it 5.126 r_scbond_it 3.157 r_mcangle_it 1.738 r_angle_refined_deg 1.643 r_angle_other_deg 0.92 r_mcbond_it 0.897 r_mcbond_other 0.282 r_chiral_restr 0.093 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2912 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 7
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SOLVE phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling