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Crystal structure of human EB1 in complex with microtubule Tip localization signal peptide of MACF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WU9 PDB ENTRY 1WU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 298 0.2M MAGNESIUM ACETATE, 20% PEG 3350, pH 7.40, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 1.66 25.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.614 α = 90 b = 44.896 β = 98.57 c = 74.84 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2008-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0009 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.5 96.1 0.088 9.94 10167 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.68 98 0.426 3.43
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1WU9 2.5 25 9675 487 96.2 0.215 0.213 0.2119 0.255 0.25 RANDOM 54.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.4 0.36 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.298 r_dihedral_angle_4_deg 19.799 r_dihedral_angle_3_deg 16.715 r_scangle_it 7.792 r_scbond_it 5.59 r_dihedral_angle_1_deg 4.888 r_mcangle_it 3.263 r_mcbond_it 2.247 r_angle_refined_deg 1.131 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.298 r_dihedral_angle_4_deg 19.799 r_dihedral_angle_3_deg 16.715 r_scangle_it 7.792 r_scbond_it 5.59 r_dihedral_angle_1_deg 4.888 r_mcangle_it 3.263 r_mcbond_it 2.247 r_angle_refined_deg 1.131 r_nbtor_refined 0.303 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.17 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2290 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling