☰ Navigation Tabs
Crystal structure of a duf1311 family protein (pp0307) from pseudomonas putida kt2440 at 1.85 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.67 293 NANODROP, 2.10M Ammonium sulfate, 0.250M Potassium sodium tartrate, 0.1M Sodium citrate - citric acid pH 5.67, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.64 53.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.027 α = 90 b = 100.027 β = 90 c = 58.343 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2009-01-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91162, 0.97964, 0.97949 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 29.173 100 0.065 0.065 0.07 18.5 7.2 25875 31.628
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.9 100 0.692 0.692 2.7 7.3 1880
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 29.173 25827 1314 99.96 0.179 0.178 0.1899 0.199 0.2152 RANDOM 25.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.536 r_dihedral_angle_4_deg 19.668 r_dihedral_angle_3_deg 12.441 r_scangle_it 7.981 r_scbond_it 5.423 r_dihedral_angle_1_deg 4.235 r_mcangle_it 2.862 r_mcbond_it 1.798 r_angle_refined_deg 1.486 r_angle_other_deg 1.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.536 r_dihedral_angle_4_deg 19.668 r_dihedral_angle_3_deg 12.441 r_scangle_it 7.981 r_scbond_it 5.423 r_dihedral_angle_1_deg 4.235 r_mcangle_it 2.862 r_mcbond_it 1.798 r_angle_refined_deg 1.486 r_angle_other_deg 1.178 r_mcbond_other 0.717 r_chiral_restr 0.151 r_bond_refined_d 0.018 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1561 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing