X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 3E1J 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
152892.45M Ammonium Sulfate, 0.1M sodium Citrate pH 5.0, temperature 289K
Crystal Properties
Matthews coefficientSolvent content
3.4664.47

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 207.641α = 90
b = 207.641β = 90
c = 142.43γ = 90
Symmetry
Space GroupP 42 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-11.7429ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.73595.60.14617.210.4816058160511
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8576.80.4693.84.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3E1J2.734.6177457409095.410.244190.243260.26169RANDOM11.481
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.08-0.080.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.038
r_dihedral_angle_4_deg23.965
r_dihedral_angle_3_deg21.1
r_dihedral_angle_1_deg4.645
r_scangle_it3.497
r_scbond_it2.172
r_angle_refined_deg1.554
r_mcangle_it1.206
r_mcbond_it0.754
r_nbtor_refined0.319
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.038
r_dihedral_angle_4_deg23.965
r_dihedral_angle_3_deg21.1
r_dihedral_angle_1_deg4.645
r_scangle_it3.497
r_scbond_it2.172
r_angle_refined_deg1.554
r_mcangle_it1.206
r_mcbond_it0.754
r_nbtor_refined0.319
r_nbd_refined0.232
r_symmetry_vdw_refined0.217
r_xyhbond_nbd_refined0.186
r_symmetry_hbond_refined0.165
r_chiral_restr0.127
r_bond_refined_d0.016
r_metal_ion_refined0.014
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15876
Nucleic Acid Atoms
Solvent Atoms536
Heterogen Atoms375

Software

Software
Software NamePurpose
ADSCdata collection
MOLREPphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling