☰ Navigation Tabs
Crystal structure of human Serine/threonine-protein kinase MST4 in complex with an quinazolin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CKX PDB ENTRY 3CKX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277.15 12%w/v PEG 3350; 0.005M CdCl2; 0.1M HEPES, pH7.0 , VAPOR DIFFUSION, SITTING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.92 α = 90 b = 91.25 β = 90 c = 108.97 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR225 CCD Dynamically bendable mirror 2009-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.8800 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 46.78 100 0.139 9 4.6 28094 28094 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.48 100 0.849 2 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CKX 2.35 46.78 28044 26636 1408 99.93 0.22168 0.21879 0.2345 0.27698 0.286 RANDOM 18.182
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.57 0.55 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.494 r_dihedral_angle_4_deg 17.788 r_sphericity_bonded 17.276 r_dihedral_angle_3_deg 15.57 r_rigid_bond_restr 6.59 r_dihedral_angle_1_deg 6.112 r_sphericity_free 5.558 r_scangle_it 4.543 r_scbond_it 2.548 r_mcangle_it 1.843
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.494 r_dihedral_angle_4_deg 17.788 r_sphericity_bonded 17.276 r_dihedral_angle_3_deg 15.57 r_rigid_bond_restr 6.59 r_dihedral_angle_1_deg 6.112 r_sphericity_free 5.558 r_scangle_it 4.543 r_scbond_it 2.548 r_mcangle_it 1.843 r_angle_refined_deg 1.477 r_mcbond_it 0.969 r_angle_other_deg 0.951 r_mcbond_other 0.255 r_chiral_restr 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4287 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 65
Software Software Software Name Purpose PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling