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Crystal structure of EUTL shell protein of the bacterial ethanolamine micrompartment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other MODEL WAS DERIVED FROM FITTING INTO A 3.5 A SAD DENSITY DERIVED FROM TWO MERCURY ATOMS.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 298 2M Nacl, 100mM phosphate, MES buffer pH6.5, 5% PEG 400, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.29 46.27
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.384 α = 90 b = 67.384 β = 90 c = 79.661 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r SI-MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 19.95 85.8 0.08 51500 27.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.3 74.3 0.278 4.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT MODEL WAS DERIVED FROM FITTING INTO A 3.5 A SAD DENSITY DERIVED FROM TWO MERCURY ATOMS. 2.2 19.65 41108 34866 2944 100 0.223 0.223 0.2374 0.278 0.24 RANDOM 19.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -10.85 -10.85 21.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.594 r_dihedral_angle_4_deg 25.012 r_dihedral_angle_3_deg 22.372 r_dihedral_angle_1_deg 7.13 r_scangle_it 4.162 r_scbond_it 2.632 r_angle_refined_deg 2.289 r_mcangle_it 1.606 r_mcbond_it 0.935 r_angle_other_deg 0.879
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.594 r_dihedral_angle_4_deg 25.012 r_dihedral_angle_3_deg 22.372 r_dihedral_angle_1_deg 7.13 r_scangle_it 4.162 r_scbond_it 2.632 r_angle_refined_deg 2.289 r_mcangle_it 1.606 r_mcbond_it 0.935 r_angle_other_deg 0.879 r_mcbond_other 0.188 r_chiral_restr 0.116 r_bond_refined_d 0.021 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3118 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 2
Software Software Software Name Purpose ADSC data collection SOLVE phasing REFMAC refinement AND data reduction AND data scaling