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Crystal structure of putative histidinol-phosphate aminotransferase (NP_281508.1) from Campylobacter jejuni at 2.01 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 NANODROP, 10.0% Isopropanol, 20.0% PEG 4000, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.12 42.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.745 α = 90 b = 79.42 β = 90 c = 166.918 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-08-27 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9789 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 45.549 95.3 0.085 46287 -3 23.545
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.08 75.9 0.525 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.01 45.549 46226 2335 95.35 0.177 0.174 0.1826 0.235 0.2411 RANDOM 32.891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.04 -0.37 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 20.372 r_dihedral_angle_3_deg 11.842 r_dihedral_angle_1_deg 3.649 r_scangle_it 3.365 r_scbond_it 2.289 r_angle_refined_deg 1.676 r_mcangle_it 1.225 r_angle_other_deg 1.083 r_mcbond_it 0.803
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.192 r_dihedral_angle_4_deg 20.372 r_dihedral_angle_3_deg 11.842 r_dihedral_angle_1_deg 3.649 r_scangle_it 3.365 r_scbond_it 2.289 r_angle_refined_deg 1.676 r_mcangle_it 1.225 r_angle_other_deg 1.083 r_mcbond_it 0.803 r_symmetry_hbond_refined 0.282 r_mcbond_other 0.23 r_symmetry_vdw_other 0.214 r_nbd_refined 0.207 r_xyhbond_nbd_refined 0.19 r_nbtor_refined 0.184 r_symmetry_vdw_refined 0.168 r_nbd_other 0.167 r_chiral_restr 0.095 r_nbtor_other 0.09 r_xyhbond_nbd_other 0.019 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5680 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction ADSC data collection XDS data reduction SHELXD phasing autoSHARP phasing