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Crystal Structure of Arrestin2S and Clathrin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G4M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 100 mM bis_tris propane
4 -4.5 M ammonium acetate
4.5% ethylene glycol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.55 65.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.857 α = 90 b = 126.173 β = 90 c = 129.505 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2006-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40 99.7 0.056 21 61963
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1G4M 2.2 35.07 61298 58019 3099 99.7 0.203 0.2 0.2318 0.251 0.2692 RANDOM 42.02
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.9 r_dihedral_angle_4_deg 20.14 r_dihedral_angle_3_deg 16.321 r_dihedral_angle_1_deg 8.495 r_scangle_it 6.639 r_scbond_it 4.199 r_mcangle_it 2.961 r_angle_refined_deg 2.633 r_mcbond_it 1.689 r_bond_refined_d 0.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.9 r_dihedral_angle_4_deg 20.14 r_dihedral_angle_3_deg 16.321 r_dihedral_angle_1_deg 8.495 r_scangle_it 6.639 r_scbond_it 4.199 r_mcangle_it 2.961 r_angle_refined_deg 2.633 r_mcbond_it 1.689 r_bond_refined_d 0.031 r_gen_planes_refined 0.012 r_chiral_restr 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5311 Nucleic Acid Atoms Solvent Atoms 276 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling