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Crystal structure of gluconate kinase from Lactobacillus acidophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.6 291 0.1 M Sodium citrate tribasic dihydrate pH 5.6, 35% v/v tert-Butanol, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.82 67.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 122.638 α = 90 b = 96.008 β = 93.32 c = 72.94 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 mirrors 2009-02-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 0.9792 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 97.1 0.146 11.2 5.8 33281 33170 34.76
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 88.3 0.606 1.7 4.5 4255
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.4 40.079 33170 32163 1638 97.18 0.2009 0.1992 0.1943 0.2306 0.2228 Random 34.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.9761 -3.7951 11.2437 -7.2677
RMS Deviations Key Refinement Restraint Deviation f_bond_d f_bond_d_na f_bond_d_prot f_angle_d f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d
RMS Deviations Key Refinement Restraint Deviation f_bond_d f_bond_d_na f_bond_d_prot f_angle_d f_angle_d_na f_angle_d_prot f_angle_deg f_angle_deg_na f_angle_deg_prot f_dihedral_angle_d f_dihedral_angle_d_na f_dihedral_angle_d_prot f_improper_angle_d f_improper_angle_d_na f_improper_angle_d_prot f_mcbond_it f_mcangle_it f_scbond_it f_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3801 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms
Software Software Software Name Purpose CBASS data collection PHENIX model building PHENIX refinement MOSFLM data reduction SCALA data scaling PHENIX phasing