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The crystal structure of the protein with unknown function from Thermoplasma acidophilum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 25% PEG4000,0.1M Mes, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.09 60.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 184.318 α = 90 b = 184.318 β = 90 c = 260.485 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2006-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 101.02 99.6 0.14 17.5 9.7 44574 44396 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.768 97.53 0.67 1.17 6.3 3446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.7 101.02 1 44574 44396 2363 99.6 0.19923 0.19623 0.2064 0.25556 0.2632 RANDOM 40.639
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.54 0.77 1.54 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.312 r_dihedral_angle_4_deg 23.612 r_dihedral_angle_3_deg 23.571 r_dihedral_angle_1_deg 8.528 r_scangle_it 4.176 r_scbond_it 2.403 r_angle_refined_deg 2.067 r_mcangle_it 1.618 r_angle_other_deg 1.136 r_mcbond_it 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.312 r_dihedral_angle_4_deg 23.612 r_dihedral_angle_3_deg 23.571 r_dihedral_angle_1_deg 8.528 r_scangle_it 4.176 r_scbond_it 2.403 r_angle_refined_deg 2.067 r_mcangle_it 1.618 r_angle_other_deg 1.136 r_mcbond_it 0.822 r_mcbond_other 0.119 r_chiral_restr 0.118 r_bond_refined_d 0.023 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9264 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection HKL-2000 data scaling REFMAC refinement HKL-2000 data reduction