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Crystal structure of the Bacillus anthracis glmS ribozyme bound to MaN6P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion, sitting drops 6.8 298 11% PEG 8000, 9% DMSO, 0.02M SODIUM CACODYLATE, 0.02M MAGNESIUM CHLORIDE, 0.15M POTASSIUM CHLORIDE, pH 6.8, vapor diffusion, sitting drops, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.36 47.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.401 α = 90 b = 232.369 β = 90.65 c = 104.657 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 92.9 0.14 8.471 3.9 41443
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 90.6 0.779 3.9 4023
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.01 34.75 41406 2127 92.41 0.258 0.255 0.2513 0.311 0.2913 RANDOM 80.025
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.04 -1.06 -1.24 3.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.793 r_dihedral_angle_4_deg 16.135 r_dihedral_angle_3_deg 12.97 r_dihedral_angle_1_deg 2.987 r_angle_other_deg 1.697 r_scangle_it 0.819 r_angle_refined_deg 0.733 r_scbond_it 0.458 r_mcangle_it 0.259 r_mcbond_it 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 23.793 r_dihedral_angle_4_deg 16.135 r_dihedral_angle_3_deg 12.97 r_dihedral_angle_1_deg 2.987 r_angle_other_deg 1.697 r_scangle_it 0.819 r_angle_refined_deg 0.733 r_scbond_it 0.458 r_mcangle_it 0.259 r_mcbond_it 0.142 r_chiral_restr 0.037 r_mcbond_other 0.01 r_bond_refined_d 0.002 r_gen_planes_refined 0.001 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2864 Nucleic Acid Atoms 13081 Solvent Atoms 134 Heterogen Atoms 25
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing