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Crystal structure of the G33A mutant Bacillus anthracis glmS ribozyme bound to GlcN6P
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapor diffusion, sitting drops 6.8 298 11% PEG 8000, 9% DMSO, 0.02M SODIUM CACODYLATE, 0.02M MAGNESIUM CHLORIDE, 0.15M POTASSIUM CHLORIDE, pH 6.8, vapor diffusion, sitting drops, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.45 49.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.389 α = 90 b = 232.671 β = 92.21 c = 106.576 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.1 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 28.23 97.6 0.12 9.863 4.1 46457
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 94.6 4 4492
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 28.23 45861 2333 97.73 0.253 0.25 0.2642 0.318 0.3118 RANDOM 61.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 -1.67 -0.52 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.584 r_dihedral_angle_3_deg 15.964 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_1_deg 4.458 r_angle_other_deg 1.696 r_scangle_it 0.91 r_angle_refined_deg 0.892 r_scbond_it 0.503 r_mcangle_it 0.333 r_mcbond_it 0.179
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.584 r_dihedral_angle_3_deg 15.964 r_dihedral_angle_4_deg 15.37 r_dihedral_angle_1_deg 4.458 r_angle_other_deg 1.696 r_scangle_it 0.91 r_angle_refined_deg 0.892 r_scbond_it 0.503 r_mcangle_it 0.333 r_mcbond_it 0.179 r_chiral_restr 0.041 r_mcbond_other 0.016 r_bond_refined_d 0.003 r_gen_planes_refined 0.002 r_bond_other_d r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2854 Nucleic Acid Atoms 13172 Solvent Atoms 82 Heterogen Atoms 74
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction