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Crystal Structure of Biotin Carboxylase in Complex with Biotin, Bicarbonate, ADP and Mg Ion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 23% PEG3350, 0.12M Li2SO4, 3.9% SORBITOL, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.75 55.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.317 α = 90 b = 106.166 β = 90 c = 121.486 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR 2008-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 99.2 0.063 21.641 5 73059
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.5 0.343 4.8 7221
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 30 72986 3678 99.17 0.184 0.182 0.1823 0.216 0.2158 RANDOM 32.57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 0.97 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_4_deg 16.802 r_dihedral_angle_3_deg 14.187 r_dihedral_angle_1_deg 4.994 r_scangle_it 2.581 r_scbond_it 1.532 r_angle_refined_deg 1.184 r_mcangle_it 0.997 r_mcbond_it 0.581 r_symmetry_hbond_refined 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.596 r_dihedral_angle_4_deg 16.802 r_dihedral_angle_3_deg 14.187 r_dihedral_angle_1_deg 4.994 r_scangle_it 2.581 r_scbond_it 1.532 r_angle_refined_deg 1.184 r_mcangle_it 0.997 r_mcbond_it 0.581 r_symmetry_hbond_refined 0.47 r_nbtor_refined 0.298 r_nbd_refined 0.184 r_symmetry_vdw_refined 0.183 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.077 r_metal_ion_refined 0.024 r_bond_refined_d 0.009 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6842 Nucleic Acid Atoms Solvent Atoms 856 Heterogen Atoms 96
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction