☰ Navigation Tabs
T. thermophilus 16S rRNA G527 methyltransferase in complex with AdoMet in space group I222
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 277 30% (v/v) methyl-2,4-pentanediol (MPD), microbatch technique under oil, temperature 277K, pH 6.8
Crystal Properties Matthews coefficient Solvent content 3.87 68.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.103 α = 90 b = 113.976 β = 90 c = 132.677 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-12-05 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 97.9 0.063 5.6 48613
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.18 99.2 0.528 3.6 5.6
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION 2.1 28.82 1.34 47884 2419 97.9 0.182 0.181 0.1777 0.201 0.1959 39.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.286 -0.416 0.702
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.62 f_angle_d 0.782 f_chiral_restr 0.048 f_plane_restr 0.004 f_bond_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3700 Nucleic Acid Atoms Solvent Atoms 528 Heterogen Atoms 59
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing REFMAC refinement