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Hepatitis C virus polymerase NS5B (BK 1-570) with thiazine inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GIQ PDB ENTRY 2GIQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.9 293 50 mM Na Citrate pH 4.9, 24% PEG 4000, 7.5% glycerol, soaking liquor containing 30% glycerol, 0.5mM inhibitor, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.26 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.915 α = 90 b = 106.169 β = 90 c = 126.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98.2 0.132 4.2 59593 23.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 89.8 0.457 2.1 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 2GIQ 2.2 48.97 59593 55641 2939 0.192 0.19 0.1944 0.238 0.2386 RANDOM 17.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 1.15 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.82 r_dihedral_angle_3_deg 15.979 r_dihedral_angle_4_deg 14.966 r_dihedral_angle_1_deg 6.128 r_scangle_it 2.743 r_scbond_it 1.813 r_angle_refined_deg 1.396 r_mcangle_it 1.265 r_angle_other_deg 0.955 r_mcbond_it 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.82 r_dihedral_angle_3_deg 15.979 r_dihedral_angle_4_deg 14.966 r_dihedral_angle_1_deg 6.128 r_scangle_it 2.743 r_scbond_it 1.813 r_angle_refined_deg 1.396 r_mcangle_it 1.265 r_angle_other_deg 0.955 r_mcbond_it 0.802 r_symmetry_vdw_other 0.213 r_nbd_refined 0.2 r_nbd_other 0.192 r_symmetry_vdw_refined 0.192 r_symmetry_hbond_refined 0.176 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.167 r_mcbond_other 0.148 r_nbtor_other 0.086 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8796 Nucleic Acid Atoms Solvent Atoms 514 Heterogen Atoms 78
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling