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Crystal structure of the protein with unknown function from Clostridium acetobutylicum ATCC 824
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 20% PEG 3350, 0.1M Bis-tris, 0.2M NaCl, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.28 46.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.048 α = 90 b = 166.841 β = 119.06 c = 66.974 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2007-12-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 58.62 97.88 0.103 12.63 4.3 82931 81173 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.99 2.05 84.82 0.439 1.47 3.1 6459
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.99 58.62 81173 81173 4251 97.88 0.19649 0.19649 0.19344 0.2084 0.2537 0.2624 RANDOM 27.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.02 2.04 -1.89 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.929 r_dihedral_angle_4_deg 21.701 r_dihedral_angle_3_deg 16.819 r_dihedral_angle_1_deg 7.971 r_scangle_it 4.301 r_scbond_it 3.107 r_mcangle_it 1.836 r_angle_refined_deg 1.648 r_mcbond_it 1.483 r_angle_other_deg 0.966
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.929 r_dihedral_angle_4_deg 21.701 r_dihedral_angle_3_deg 16.819 r_dihedral_angle_1_deg 7.971 r_scangle_it 4.301 r_scbond_it 3.107 r_mcangle_it 1.836 r_angle_refined_deg 1.648 r_mcbond_it 1.483 r_angle_other_deg 0.966 r_mcbond_other 0.408 r_symmetry_hbond_refined 0.276 r_nbd_refined 0.211 r_nbd_other 0.211 r_symmetry_vdw_other 0.205 r_symmetry_vdw_refined 0.202 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.105 r_nbtor_other 0.09 r_xyhbond_nbd_other 0.025 r_bond_refined_d 0.017 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9298 Nucleic Acid Atoms Solvent Atoms 506 Heterogen Atoms
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling