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Native PhpD with Cadmium Atoms
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 278 1 M sodium acetate, 0.1 M HEPES, 0.05 M cadmium sulphate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 2.15 42.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.198 α = 90 b = 95.736 β = 90 c = 102.163 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.000 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 98.8 0.071 33.3 9.7 36648
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 90.6 0.511 3.3 7.7 3480
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 25 36648 1924 98.92 0.21182 0.20998 0.2091 0.24647 0.2449 RANDOM 26.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.14 2.73 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.722 r_dihedral_angle_4_deg 17.855 r_dihedral_angle_3_deg 14.36 r_dihedral_angle_1_deg 5.851 r_scangle_it 2.286 r_scbond_it 1.457 r_angle_refined_deg 1.073 r_mcangle_it 0.986 r_mcbond_it 0.676 r_angle_other_deg 0.564
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.722 r_dihedral_angle_4_deg 17.855 r_dihedral_angle_3_deg 14.36 r_dihedral_angle_1_deg 5.851 r_scangle_it 2.286 r_scbond_it 1.457 r_angle_refined_deg 1.073 r_mcangle_it 0.986 r_mcbond_it 0.676 r_angle_other_deg 0.564 r_nbtor_refined 0.296 r_symmetry_vdw_refined 0.206 r_nbd_refined 0.199 r_nbd_other 0.197 r_nbtor_other 0.171 r_metal_ion_refined 0.166 r_symmetry_hbond_refined 0.144 r_mcbond_other 0.12 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.069 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3179 Nucleic Acid Atoms Solvent Atoms 339 Heterogen Atoms 13
Software Software Software Name Purpose MAR345dtb data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling