☰ Navigation Tabs
CRYSTAL STRUCTURE OF A PUTATIVE PHOSPHOSUGAR ISOMERASE (CD3275) FROM CLOSTRIDIUM DIFFICILE 630 AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 277 NANODROP, 0.20M (NH4)2H Citrate, 20.0% PEG 3350, No Buffer pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.12 42.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.525 α = 90 b = 55.914 β = 114.22 c = 103.031 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.97967, 0.94645 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 28.989 88.4 0.105 0.105 4.412 3.2 55259 13.458
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 43.3 0.247 0.247 3 1.6 1940
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 28.989 55259 2802 88.06 0.161 0.159 0.194 0.2191 RANDOM 17.311
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -1.01 -1.14 0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.162 r_dihedral_angle_4_deg 13.32 r_dihedral_angle_3_deg 10.557 r_scangle_it 4.989 r_dihedral_angle_1_deg 3.845 r_scbond_it 3.735 r_mcangle_it 2.086 r_angle_refined_deg 1.567 r_mcbond_it 1.335 r_angle_other_deg 1.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.162 r_dihedral_angle_4_deg 13.32 r_dihedral_angle_3_deg 10.557 r_scangle_it 4.989 r_dihedral_angle_1_deg 3.845 r_scbond_it 3.735 r_mcangle_it 2.086 r_angle_refined_deg 1.567 r_mcbond_it 1.335 r_angle_other_deg 1.157 r_mcbond_other 0.269 r_nbd_refined 0.212 r_symmetry_vdw_other 0.192 r_symmetry_vdw_refined 0.186 r_nbtor_refined 0.171 r_nbd_other 0.166 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.099 r_nbtor_other 0.081 r_xyhbond_nbd_other 0.035 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5427 Nucleic Acid Atoms Solvent Atoms 618 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing