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Crystal Structure of the Wild-Type Restriction-Modification Controller Protein C.Esp1396I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 precipitation 8 277 150 mM NaCl, 40 mM Tris-HCl, 5 % w/v glycerol, 2.5 mM CaCl2, pH 8.0, precipitation, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.717 α = 90 b = 128.717 β = 90 c = 137.508 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-11-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.9330 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 46.984 99.5 0.135 16.8 11.17 31845 31686 -3 32.789
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 3 93.7 0.372 7.7 5569
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 46.984 7.7 31845 30225 1606 99.96 0.239 0.239 0.237 0.236 0.269 0.2657 RANDOM 33.078
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.601 r_dihedral_angle_3_deg 19.524 r_dihedral_angle_4_deg 19.086 r_dihedral_angle_1_deg 5.647 r_scangle_it 2.273 r_angle_refined_deg 1.579 r_scbond_it 1.303 r_mcangle_it 0.78 r_mcbond_it 0.487 r_symmetry_vdw_refined 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.601 r_dihedral_angle_3_deg 19.524 r_dihedral_angle_4_deg 19.086 r_dihedral_angle_1_deg 5.647 r_scangle_it 2.273 r_angle_refined_deg 1.579 r_scbond_it 1.303 r_mcangle_it 0.78 r_mcbond_it 0.487 r_symmetry_vdw_refined 0.333 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.249 r_nbd_refined 0.225 r_chiral_restr 0.162 r_xyhbond_nbd_refined 0.146 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8689 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction MxCuBE data collection XDS data reduction