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The structure of UNC5b cytoplasmic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 0.4~0.5M Ammonium Phosphate, 0.1M MES Buffer, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.09 41.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.243 α = 90 b = 62.71 β = 90 c = 118.11 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2007-06-01
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.8 0.074 0.074 6.5 25672 25672
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 95.8 0.381 0.381 6 3572
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2 27.78 25576 1293 98.38 0.196 0.193 0.25 0.2269 RANDOM 36.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.64 0.83 -2.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.648 r_dihedral_angle_4_deg 16.357 r_dihedral_angle_3_deg 13.91 r_dihedral_angle_1_deg 6.099 r_scangle_it 5.546 r_scbond_it 3.932 r_mcangle_it 3.033 r_mcbond_it 1.98 r_angle_refined_deg 1.185 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.648 r_dihedral_angle_4_deg 16.357 r_dihedral_angle_3_deg 13.91 r_dihedral_angle_1_deg 6.099 r_scangle_it 5.546 r_scbond_it 3.932 r_mcangle_it 3.033 r_mcbond_it 1.98 r_angle_refined_deg 1.185 r_nbtor_refined 0.299 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.173 r_symmetry_hbond_refined 0.136 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2991 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 15
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection