☰ Navigation Tabs
Crystal structure of GCN5-related N-acetyltransferase-like protein (ZP_00874857) (ZP_00874857.1) from Streptococcus suis 89/1591 at 1.80 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277 NANODROP, 0.20M MgCl2, 10.0% PEG 3000, 0.1M Cacodylate pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.47 50.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.395 α = 90 b = 83.88 β = 90 c = 93.763 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2008-11-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91162, 0.97821, 0.97879 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.285 98.8 0.108 0.108 4.81 3.7 52108 19.743
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 98 0.753 0.753 1 3.7 3761
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.285 52068 2652 98.49 0.205 0.203 0.2095 0.239 0.2434 RANDOM 32.395
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.03 -2.07 4.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.546 r_dihedral_angle_4_deg 12.26 r_dihedral_angle_3_deg 10.642 r_scangle_it 7.52 r_scbond_it 5.266 r_dihedral_angle_1_deg 3.903 r_mcangle_it 3.004 r_mcbond_it 1.814 r_angle_refined_deg 1.576 r_angle_other_deg 0.965
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.546 r_dihedral_angle_4_deg 12.26 r_dihedral_angle_3_deg 10.642 r_scangle_it 7.52 r_scbond_it 5.266 r_dihedral_angle_1_deg 3.903 r_mcangle_it 3.004 r_mcbond_it 1.814 r_angle_refined_deg 1.576 r_angle_other_deg 0.965 r_mcbond_other 0.472 r_symmetry_hbond_refined 0.228 r_xyhbond_nbd_refined 0.213 r_nbd_refined 0.199 r_symmetry_vdw_other 0.189 r_nbtor_refined 0.187 r_symmetry_vdw_refined 0.18 r_nbd_other 0.169 r_nbtor_other 0.09 r_chiral_restr 0.076 r_xyhbond_nbd_other 0.054 r_metal_ion_refined 0.041 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3904 Nucleic Acid Atoms Solvent Atoms 532 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing