☰ Navigation Tabs
Crystal Structure of the Glycopeptide N-methyltransferase MtfA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 0.1M MES pH 6.5, 18% PEG-monomethyl ether 5K, vapor diffusion, hanging drop, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.55 51.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.443 α = 90 b = 71.682 β = 103.02 c = 75.189 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2007-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.9800 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.4 0.046 20.585 2.5 45124
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 84.6 0.315 2.2 7434
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 50 44333 2239 98.25 0.239 0.238 0.2375 0.271 0.269 RANDOM 41.753
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.31 -0.22 1.78 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.653 r_dihedral_angle_4_deg 17.386 r_dihedral_angle_3_deg 14.524 r_dihedral_angle_1_deg 5.224 r_scangle_it 1.83 r_scbond_it 1.214 r_angle_refined_deg 1.054 r_mcangle_it 0.908 r_mcbond_it 0.675 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.653 r_dihedral_angle_4_deg 17.386 r_dihedral_angle_3_deg 14.524 r_dihedral_angle_1_deg 5.224 r_scangle_it 1.83 r_scbond_it 1.214 r_angle_refined_deg 1.054 r_mcangle_it 0.908 r_mcbond_it 0.675 r_nbtor_refined 0.294 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.172 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3406 Nucleic Acid Atoms Solvent Atoms 143 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling SHELXS phasing