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Crystal structure of d(CACGCG).d(CGCGTG) grown in presence of 1mM MnCl2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.99 293 50mM Sodium Cacodylate, 1mM MnCl2, 1mM Spermine, 50% Methyl pentane diol, pH 6.99, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.7 27.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 17.835 α = 90 b = 30.907 β = 90 c = 44.731 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 IMAGE PLATE MARRESEARCH 2008-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 15 95.2 0.105 0.0896 4.1 4.56 1914 1819 27.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.4 0.2886 0.258 1.2 4.69 172
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 15 1711 1711 77 96.08 0.23892 0.23882 0.2241 0.24078 0.2235 RANDOM 12.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 -0.57 1.27
RMS Deviations Key Refinement Restraint Deviation r_angle_refined_deg 3.767 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.183 r_nbd_refined 0.182 r_chiral_restr 0.177 r_xyhbond_nbd_refined 0.116 r_symmetry_hbond_refined 0.113 r_bond_refined_d 0.027 r_gen_planes_refined 0.016
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 240 Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose MAR345 data collection AMoRE phasing REFMAC refinement AUTOMAR data reduction SCALEPACK data scaling