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Structure of a putative bacteriophage protein from Escherichia coli str. K-12 substr. MG1655
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 0.2M CaCl2, 20%PEG 3350, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.27 45.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.311 α = 90 b = 71.311 β = 90 c = 32.333 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2007-03-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97921 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 98.6 0.065 48.638 9.9 6049 6049 -3 37.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 87.7 0.226 6.1 341
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.1 30.88 5697 5697 260 99.39 0.188 0.188 0.186 0.1945 0.249 0.2629 RANDOM 36.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.22 1.11 2.22 -3.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.403 r_dihedral_angle_4_deg 19.801 r_dihedral_angle_3_deg 17.821 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.804 r_scbond_it 2.285 r_mcangle_it 1.501 r_angle_refined_deg 1.403 r_angle_other_deg 0.9 r_mcbond_it 0.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.403 r_dihedral_angle_4_deg 19.801 r_dihedral_angle_3_deg 17.821 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.804 r_scbond_it 2.285 r_mcangle_it 1.501 r_angle_refined_deg 1.403 r_angle_other_deg 0.9 r_mcbond_it 0.795 r_mcbond_other 0.142 r_chiral_restr 0.081 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 597 Nucleic Acid Atoms Solvent Atoms 44 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SBC-Collect data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building