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The crystal structure of a TrpR like protein from Eubacterium eligens ATCC 27750
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.1M HEPES pH7.5, 0.5M Magnesium formate dihydrate, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.12 60.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.788 α = 90 b = 48.788 β = 90 c = 126.477 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2008-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38.63 99.24 0.106 31.34 15.4 7945 7885 2 2 41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.257 94.44 0.548 1.28 10.8 594
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 38.63 1.28 7945 7885 381 99.24 0.20632 0.20484 0.205 0.23657 0.2315 RANDOM 39.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.72 1.72 -3.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.954 r_dihedral_angle_4_deg 23.461 r_dihedral_angle_3_deg 16.496 r_dihedral_angle_1_deg 5.673 r_scangle_it 5.608 r_scbond_it 3.336 r_mcangle_it 2.186 r_angle_refined_deg 1.6 r_mcbond_it 1.099 r_angle_other_deg 0.901
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.954 r_dihedral_angle_4_deg 23.461 r_dihedral_angle_3_deg 16.496 r_dihedral_angle_1_deg 5.673 r_scangle_it 5.608 r_scbond_it 3.336 r_mcangle_it 2.186 r_angle_refined_deg 1.6 r_mcbond_it 1.099 r_angle_other_deg 0.901 r_mcbond_other 0.253 r_chiral_restr 0.103 r_bond_refined_d 0.022 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 787 Nucleic Acid Atoms Solvent Atoms 59 Heterogen Atoms 3
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling