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IgG1 Fab characterized by H/D exchange
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 38% PEG 400, 200 mM sodium chloride, 100 mM Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.68 66.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 243.051 α = 90 b = 61.938 β = 113.94 c = 100.846 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2008-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 1.000 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 93.9 0.089 31.7 4.2 42711 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 50 42711 2293 93.92 0.21301 0.21039 0.22 0.26107 0.2578 RANDOM 29.514
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.16 2.28 -1.49 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.839 r_dihedral_angle_1_deg 26.125 r_dihedral_angle_4_deg 25.465 r_dihedral_angle_3_deg 19.927 r_scangle_it 4.087 r_scbond_it 2.763 r_angle_refined_deg 2.743 r_mcangle_it 1.645 r_angle_other_deg 1.276 r_mcbond_it 1.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.839 r_dihedral_angle_1_deg 26.125 r_dihedral_angle_4_deg 25.465 r_dihedral_angle_3_deg 19.927 r_scangle_it 4.087 r_scbond_it 2.763 r_angle_refined_deg 2.743 r_mcangle_it 1.645 r_angle_other_deg 1.276 r_mcbond_it 1.06 r_mcbond_other 0.24 r_symmetry_vdw_other 0.236 r_nbd_other 0.234 r_nbd_refined 0.222 r_nbtor_refined 0.214 r_xyhbond_nbd_refined 0.18 r_symmetry_vdw_refined 0.176 r_chiral_restr 0.15 r_nbtor_other 0.116 r_symmetry_hbond_refined 0.073 r_xyhbond_nbd_other 0.06 r_bond_refined_d 0.029 r_gen_planes_refined 0.01 r_bond_other_d 0.005 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6485 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling