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Crystal Structure of Hsc70/Bag1 in complex with ATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1HX1 PDB ENTRY 1HX1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 15% PEG3350, 0.1M Tris buffer, 25mM sodium-potassium tartrate, pH8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 45.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.289 α = 90 b = 121.123 β = 106.25 c = 52.773 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2006-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 24.87 98.2 0.114 3.3 3.9 32145 32145 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 97.4 0.539 1.2 3.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1HX1 2.2 24.87 1 1 22350 22350 1859 98.38 0.2074 0.20049 0.29235 0.192 RANDOM 37.924
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.43 -1.22 -1.48 3.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.497 r_dihedral_angle_4_deg 20.948 r_dihedral_angle_3_deg 19.157 r_dihedral_angle_1_deg 6.356 r_scangle_it 3.356 r_scbond_it 2.081 r_angle_refined_deg 1.648 r_mcangle_it 1.293 r_mcbond_it 0.753 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.497 r_dihedral_angle_4_deg 20.948 r_dihedral_angle_3_deg 19.157 r_dihedral_angle_1_deg 6.356 r_scangle_it 3.356 r_scbond_it 2.081 r_angle_refined_deg 1.648 r_mcangle_it 1.293 r_mcbond_it 0.753 r_nbtor_refined 0.303 r_nbd_refined 0.234 r_symmetry_vdw_refined 0.234 r_symmetry_hbond_refined 0.199 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3798 Nucleic Acid Atoms Solvent Atoms 292 Heterogen Atoms 31
Software Software Software Name Purpose CrystalClear data collection MOLREP phasing REFMAC refinement d*TREK data reduction d*TREK data scaling