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Crystal structure of TsaR in complex with sulfate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FXQ PDB entry 3FXQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 4.6 298 0.2M Ammonium sulfate, 25% w/v PEG 4000, 0.1M Na acetate pH 4.6, microbatch under oil, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.63 53.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.11 α = 90 b = 51.83 β = 110.52 c = 107.99 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 4 2007-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.9326 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 19.9 99.7 0.00648 15.92 1 24580 24481
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 99.9 0.267 4.2 2499
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 3FXQ 2.5 19.9 24515 24479 1251 99.6 0.207 0.207 0.204 0.205 0.269 0.2758 RANDOM 17.605
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.53 0.18 -0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.585 r_dihedral_angle_4_deg 17.648 r_dihedral_angle_3_deg 16.859 r_dihedral_angle_1_deg 5.82 r_scangle_it 2.301 r_scbond_it 1.344 r_angle_refined_deg 1.336 r_mcangle_it 0.766 r_mcbond_it 0.39 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.585 r_dihedral_angle_4_deg 17.648 r_dihedral_angle_3_deg 16.859 r_dihedral_angle_1_deg 5.82 r_scangle_it 2.301 r_scbond_it 1.344 r_angle_refined_deg 1.336 r_mcangle_it 0.766 r_mcbond_it 0.39 r_chiral_restr 0.084 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4572 Nucleic Acid Atoms Solvent Atoms 251 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DNA data collection XDS data reduction XSCALE data scaling SHARP phasing RESOLVE phasing