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Crystal structure of the LysR-type transcriptional regulator TsaR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 microbatch under oil 4.6 298 2M Na formate, 0.1M Na acetate pH 4.6, microbatch under oil, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.64 53.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.496 α = 90 b = 51.489 β = 110.35 c = 107.754 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH 2 1 x-ray 298 CCD BRUKER SMART 6000 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.5418 2 ROTATING ANODE OTHER 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.849 101.02 99.1 0.0286 0.0297 25.08 59898
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.849 1.94 97 0.1313 0.1639 6.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 1.85 65.29 56875 3023 99.17 0.182 0.18 0.1826 0.213 0.2147 RANDOM 16.13
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.08 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.574 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_3_deg 12.495 r_dihedral_angle_1_deg 5.588 r_scangle_it 3.86 r_scbond_it 2.41 r_angle_refined_deg 1.353 r_mcangle_it 1.345 r_mcbond_it 0.741 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.574 r_dihedral_angle_4_deg 15.992 r_dihedral_angle_3_deg 12.495 r_dihedral_angle_1_deg 5.588 r_scangle_it 3.86 r_scbond_it 2.41 r_angle_refined_deg 1.353 r_mcangle_it 1.345 r_mcbond_it 0.741 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4509 Nucleic Acid Atoms Solvent Atoms 381 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction PROTEUM PLUS data collection XDS data reduction PROTEUM data reduction XSCALE data scaling SADABS data scaling SHARP phasing RESOLVE phasing