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Crystal Structure of the CBS domains from the Bacillus subtilis CcpN repressor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 17% PEG 2000 MME, 0.1M HEPES, Protein 8mg/ml; Drops 1+1 microliter, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 1.97 37.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.751 α = 90 b = 104.052 β = 90 c = 99.523 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 78 CCD ADSC QUANTUM 315r 2005-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.93300 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 52.058 99.5 0.087 0.074 15.1 3.6 19404 24.432
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99.5 0.191 0.162 5.9 3.4 2992
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.95 43.56 19395 642 91.9 0.20203 0.20193 0.19967 0.2718 RANDOM 29.221
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 0.07 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.795 r_dihedral_angle_4_deg 21.017 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_1_deg 9.265 r_scangle_it 5.171 r_scbond_it 3.248 r_angle_refined_deg 2.1 r_mcangle_it 1.953 r_mcbond_it 1.178 r_chiral_restr 0.174
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.795 r_dihedral_angle_4_deg 21.017 r_dihedral_angle_3_deg 16.416 r_dihedral_angle_1_deg 9.265 r_scangle_it 5.171 r_scbond_it 3.248 r_angle_refined_deg 2.1 r_mcangle_it 1.953 r_mcbond_it 1.178 r_chiral_restr 0.174 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2285 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms
Software Software Software Name Purpose SOLVE phasing REFMAC refinement MOSFLM data reduction SCALA data scaling