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Pseudomonas aeruginosa Azurin with mutated metal-binding loop sequence (CAAAHAAAM)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FS9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 150mM potassium bromide, 30% PEG MME 2000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.04 39.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.836 α = 90 b = 55.819 β = 90 c = 74.482 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM Q315 2007-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 44.7 100 0.103 21.8 11.2 5240 5240 38.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.42 100 0.373 7.4 11.4 755
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3FS9 2.3 44.68 4729 4729 510 99.89 0.26207 0.26207 0.257 0.2559 0.30839 0.3169 RANDOM 26.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 -0.69 2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.529 r_dihedral_angle_3_deg 13.535 r_dihedral_angle_1_deg 5.579 r_dihedral_angle_4_deg 5.386 r_scangle_it 1.401 r_angle_refined_deg 0.969 r_mcangle_it 0.947 r_scbond_it 0.877 r_angle_other_deg 0.781 r_mcbond_it 0.515
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.529 r_dihedral_angle_3_deg 13.535 r_dihedral_angle_1_deg 5.579 r_dihedral_angle_4_deg 5.386 r_scangle_it 1.401 r_angle_refined_deg 0.969 r_mcangle_it 0.947 r_scbond_it 0.877 r_angle_other_deg 0.781 r_mcbond_it 0.515 r_chiral_restr 0.065 r_mcbond_other 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 879 Nucleic Acid Atoms Solvent Atoms 17 Heterogen Atoms 1
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling