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Structure of human IST1(NTD) (residues 1-189)(p43212)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 296 10mM Tris-HCL, pH 8.0,
350mM NaCl, 1mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.97 58.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.18 α = 90 b = 57.18 β = 90 c = 157.262 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2008-09-08 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2008-08-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54 2 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97852, 0.91837, 0.97922 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.61 50 97.7 0.079 13.47 3.8 8387 8387 84.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.61 2.7 88.3 0.459 2.8 727
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.61 30 8360 8360 392 98.15 0.261 0.259 0.2552 0.298 0.3011 RANDOM 86.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.11 2.11 -4.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.858 r_dihedral_angle_3_deg 18.772 r_dihedral_angle_4_deg 15.684 r_dihedral_angle_1_deg 6.771 r_angle_refined_deg 1.177 r_scangle_it 1.154 r_mcangle_it 0.752 r_scbond_it 0.62 r_mcbond_it 0.408 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.858 r_dihedral_angle_3_deg 18.772 r_dihedral_angle_4_deg 15.684 r_dihedral_angle_1_deg 6.771 r_angle_refined_deg 1.177 r_scangle_it 1.154 r_mcangle_it 0.752 r_scbond_it 0.62 r_mcbond_it 0.408 r_chiral_restr 0.105 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1414 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection HKL-2000 data reduction