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Tetramerization and Cooperativity in Plasmodium falciparum glutathione transferase are mediated by the atypic loop 113-118
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q4J PDB ENTRY 1Q4J
Crystallization Crystal Properties Matthews coefficient Solvent content 2.48 50.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.472 α = 90 b = 69.407 β = 90 c = 123.323 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 34227
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q4J 2 19.71 32287 1724 99.63 0.22233 0.21995 0.2192 0.26784 0.2622 RANDOM 28.018
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 -0.03 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_dihedral_angle_3_deg 15.35 r_dihedral_angle_4_deg 14.229 r_dihedral_angle_1_deg 5.267 r_scangle_it 1.594 r_angle_refined_deg 1.131 r_scbond_it 1.078 r_mcangle_it 1.014 r_mcbond_it 0.568 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.091 r_dihedral_angle_3_deg 15.35 r_dihedral_angle_4_deg 14.229 r_dihedral_angle_1_deg 5.267 r_scangle_it 1.594 r_angle_refined_deg 1.131 r_scbond_it 1.078 r_mcangle_it 1.014 r_mcbond_it 0.568 r_nbtor_refined 0.312 r_xyhbond_nbd_refined 0.276 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.189 r_symmetry_hbond_refined 0.14 r_chiral_restr 0.077 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3385 Nucleic Acid Atoms Solvent Atoms 239 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement