☰ Navigation Tabs
Crystal Structure of the Mouse Dom3Z in Complex with GDP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.2 M potassium phosphate monobasic and 25% (w/v) PEG 3350, pH 7.5, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.46 49.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.293 α = 90 b = 73.573 β = 90 c = 108.89 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Mar CCD M-165 2008-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.9792 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 30 98.7 0.131 11.052 3.4 14312
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.69 97.7 0.489 3.4 1373
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.623 29.15 14277 720 97.99 0.207 0.204 0.2031 0.267 0.2633 RANDOM 27.371
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.32 -0.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.472 r_dihedral_angle_3_deg 17.014 r_dihedral_angle_4_deg 14.77 r_dihedral_angle_1_deg 5.778 r_scangle_it 1.603 r_angle_refined_deg 1.095 r_scbond_it 0.909 r_mcangle_it 0.706 r_mcbond_it 0.395 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.472 r_dihedral_angle_3_deg 17.014 r_dihedral_angle_4_deg 14.77 r_dihedral_angle_1_deg 5.778 r_scangle_it 1.603 r_angle_refined_deg 1.095 r_scbond_it 0.909 r_mcangle_it 0.706 r_mcbond_it 0.395 r_nbtor_refined 0.309 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.192 r_xyhbond_nbd_refined 0.154 r_symmetry_vdw_refined 0.146 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2856 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 29
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction