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Crystal Structure of the Mouse Dom3Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 0.1 M Hepes (pH 7.5) and 20% (w/v) PEG 8000, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.95 37.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.979 α = 90 b = 88.379 β = 114.2 c = 50.069 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2008-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A 0.979 NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.3 0.077 17.139 3.1 23658
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99.8 0.19 3.1 2381
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.013 30 23633 1210 97.68 0.229 0.226 0.2258 0.283 0.2812 RANDOM 18.772
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.86 -0.37 0.06 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.395 r_dihedral_angle_4_deg 16.097 r_dihedral_angle_3_deg 15.485 r_dihedral_angle_1_deg 5.785 r_scangle_it 1.838 r_angle_refined_deg 1.186 r_scbond_it 1.183 r_mcangle_it 0.782 r_mcbond_it 0.474 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.395 r_dihedral_angle_4_deg 16.097 r_dihedral_angle_3_deg 15.485 r_dihedral_angle_1_deg 5.785 r_scangle_it 1.838 r_angle_refined_deg 1.186 r_scbond_it 1.183 r_mcangle_it 0.782 r_mcbond_it 0.474 r_nbtor_refined 0.308 r_nbd_refined 0.192 r_xyhbond_nbd_refined 0.144 r_symmetry_vdw_refined 0.136 r_symmetry_hbond_refined 0.136 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2826 Nucleic Acid Atoms Solvent Atoms 241 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection