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Crystal Structure of the S. pombe Rat1-Rai1 Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 295 0.3 M sodium malonate (pH 5.0), 10 mM DTT and 14 % (w/v) PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.7 54.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.69 α = 90 b = 190.869 β = 90 c = 84.619 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Mar m-165 CCD 2008-02-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4C 0.9806 NSLS X4C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 30 92.5 0.073 17.502 4 77326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 59.9 0.356 2.7 4925
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 30 75616 3837 94.3 0.22 0.218 0.2168 0.258 0.2565 RANDOM 44.537
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.27 -2.41 1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.536 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_1_deg 5.26 r_scangle_it 1.55 r_angle_refined_deg 1.019 r_scbond_it 1.006 r_mcangle_it 0.776 r_mcbond_it 0.549 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.536 r_dihedral_angle_4_deg 18.012 r_dihedral_angle_3_deg 16.065 r_dihedral_angle_1_deg 5.26 r_scangle_it 1.55 r_angle_refined_deg 1.019 r_scbond_it 1.006 r_mcangle_it 0.776 r_mcbond_it 0.549 r_nbtor_refined 0.301 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.168 r_symmetry_hbond_refined 0.15 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8271 Nucleic Acid Atoms Solvent Atoms 648 Heterogen Atoms 7
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SnB phasing