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The Crystal Structure of the Complex between Evasin-1 and CCL3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FPR PDB ENTRY 3fpr
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 291 23% (w/v) PEG 4000, 300mM Ammonium sulfate, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.71 66.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.704 α = 90 b = 70.491 β = 90 c = 103.819 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.98 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 58 98.9 0.08 0.152 4.7 26472 26472
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.8 98 0.4 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3fpr 2.7 32.62 13520 717 99.01 0.23005 0.22605 0.225 0.30521 0.3006 RANDOM 59.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.16 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.821 r_dihedral_angle_4_deg 29.289 r_dihedral_angle_3_deg 23.877 r_dihedral_angle_1_deg 10.786 r_scangle_it 7.706 r_scbond_it 5.097 r_angle_refined_deg 4.049 r_mcangle_it 3.485 r_mcbond_it 2.034 r_nbtor_refined 0.358
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.821 r_dihedral_angle_4_deg 29.289 r_dihedral_angle_3_deg 23.877 r_dihedral_angle_1_deg 10.786 r_scangle_it 7.706 r_scbond_it 5.097 r_angle_refined_deg 4.049 r_mcangle_it 3.485 r_mcbond_it 2.034 r_nbtor_refined 0.358 r_symmetry_hbond_refined 0.332 r_nbd_refined 0.311 r_chiral_restr 0.238 r_symmetry_vdw_refined 0.21 r_xyhbond_nbd_refined 0.203 r_bond_refined_d 0.045 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1895 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 84
Software Software Software Name Purpose HKL-2000 data collection AMoRE phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling