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Crystal Structure of MtNAS in complex with thermonicotianamine
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 22% PEG 3350, 400mM NaBr, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.4 48.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.41 α = 90 b = 68.28 β = 90 c = 147.54 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2007-11-19 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2008-02-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97920 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE BM30A 0.98076, 0.98064, 0.97857 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 44.677 98.5 0.091 0.091 5.43 4.8 71146 71075
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.79 99.9 0.337 0.337 1.9 4.8 10418
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 39.56 71011 3536 98.15 0.2 0.198 0.1974 0.233 0.2332 RANDOM 16.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.82 r_dihedral_angle_3_deg 15.768 r_dihedral_angle_4_deg 15.24 r_dihedral_angle_1_deg 5.227 r_scangle_it 4.002 r_scbond_it 2.623 r_mcangle_it 1.454 r_angle_refined_deg 1.409 r_mcbond_it 0.955 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.82 r_dihedral_angle_3_deg 15.768 r_dihedral_angle_4_deg 15.24 r_dihedral_angle_1_deg 5.227 r_scangle_it 4.002 r_scbond_it 2.623 r_mcangle_it 1.454 r_angle_refined_deg 1.409 r_mcbond_it 0.955 r_nbtor_refined 0.306 r_nbd_refined 0.221 r_symmetry_vdw_refined 0.189 r_symmetry_hbond_refined 0.181 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.113 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4222 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 50
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction MOLREP phasing