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Crystal structure of aldolase antibody 33F12 Fab' in complex with hapten 1,3-diketone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AXT PDB ENTRY 1AXT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7.4 295 30% PEG 4000, 10% isopropanol, 0.1M Hepes., pH 7.4, EVAPORATION, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.42 49.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.83 α = 90 b = 81.038 β = 90 c = 174.314 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-07-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 43.56 96.1 0.054 36.891 71502
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 71.1 0.486 3470
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1AXT 1.9 43.56 71432 3601 96.12 0.216 0.215 0.2131 0.249 0.2479 RANDOM 41.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 -0.25 1.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_4_deg 17.614 r_dihedral_angle_3_deg 15.532 r_dihedral_angle_1_deg 6.022 r_scangle_it 2.624 r_scbond_it 1.746 r_angle_refined_deg 1.308 r_mcangle_it 1.275 r_mcbond_it 0.782 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.957 r_dihedral_angle_4_deg 17.614 r_dihedral_angle_3_deg 15.532 r_dihedral_angle_1_deg 6.022 r_scangle_it 2.624 r_scbond_it 1.746 r_angle_refined_deg 1.308 r_mcangle_it 1.275 r_mcbond_it 0.782 r_nbtor_refined 0.301 r_nbd_refined 0.2 r_symmetry_vdw_refined 0.196 r_symmetry_hbond_refined 0.166 r_xyhbond_nbd_refined 0.137 r_chiral_restr 0.09 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6746 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection