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CRYSTAL STRUCTURE OF a putative succinylglutamate desuccinylase / aspartoacylase family protein (SAMA_0604) FROM SHEWANELLA AMAZONENSIS SB2B AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 NANODROP, 1.5M Li2SO4, 0.1M HEPES pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.42 63.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.279 α = 90 b = 140.101 β = 90 c = 164.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Adjustable focusing mirrors in K-B geometry 2008-10-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.94645, 0.97967 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.735 88.4 0.105 0.105 5.074 4.8 184530 18.527
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.85 69.7 0.572 0.572 1.3 3.6 10674
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.735 184450 9270 88.15 0.157 0.155 0.16 0.187 0.1903 RANDOM 22.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 -0.4 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.907 r_dihedral_angle_4_deg 12.192 r_dihedral_angle_3_deg 10.879 r_scangle_it 6.346 r_scbond_it 4.743 r_dihedral_angle_1_deg 4.608 r_mcangle_it 2.711 r_mcbond_it 2.037 r_angle_refined_deg 1.684 r_angle_other_deg 0.978
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.907 r_dihedral_angle_4_deg 12.192 r_dihedral_angle_3_deg 10.879 r_scangle_it 6.346 r_scbond_it 4.743 r_dihedral_angle_1_deg 4.608 r_mcangle_it 2.711 r_mcbond_it 2.037 r_angle_refined_deg 1.684 r_angle_other_deg 0.978 r_mcbond_other 0.555 r_symmetry_vdw_other 0.283 r_nbd_refined 0.206 r_nbd_other 0.198 r_nbtor_refined 0.177 r_symmetry_hbond_refined 0.169 r_xyhbond_nbd_refined 0.159 r_chiral_restr 0.107 r_nbtor_other 0.087 r_symmetry_vdw_refined 0.073 r_bond_refined_d 0.017 r_xyhbond_nbd_other 0.01 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11443 Nucleic Acid Atoms Solvent Atoms 1759 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building SCALA data scaling PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction SHELXD phasing autoSHARP phasing