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Quaternary Structure of Drosophila melanogaster IC/Tctex-1/LC8; Allosteric Interactions of Dynein Light Chains with Dynein Intermediate Chain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2PG1 chains A and F in pdb structure 2PG1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Hanging Drop 6.5 277.15 16% PEG 8K, 100 mM sodium cacodylate, 200 mM calcium acetate, pH 6.5, Hanging Drop, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 3.36 63.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.79 α = 90 b = 115.79 β = 90 c = 90.5 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2008-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 .98 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 100 98.84 0.088 0.06 15.9 7.1 8756 8745 8.2 6.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.64 100 0.358 0.53 6.2 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT chains A and F in pdb structure 2PG1 3.5 100 7884 7873 870 99.39 0.18001 0.16975 0.1692 0.2747 0.2744 RANDOM 94.445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_mcbond_it 70.838 r_mcangle_it 64.603 r_dihedral_angle_2_deg 43.536 r_dihedral_angle_3_deg 25.725 r_dihedral_angle_4_deg 23.513 r_dihedral_angle_1_deg 12.168 r_nbtor_refined 0.306 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.204 r_symmetry_hbond_refined 0.158
RMS Deviations Key Refinement Restraint Deviation r_mcbond_it 70.838 r_mcangle_it 64.603 r_dihedral_angle_2_deg 43.536 r_dihedral_angle_3_deg 25.725 r_dihedral_angle_4_deg 23.513 r_dihedral_angle_1_deg 12.168 r_nbtor_refined 0.306 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.204 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.138 r_angle_refined_deg 0.047 r_chiral_restr 0.001 r_bond_refined_d r_bond_other_d r_angle_other_deg r_gen_planes_refined r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3436 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement DENZO data reduction HKL-2000 data scaling