☰ Navigation Tabs
RifR - Type II thioesterase from Rifamycin NRPS/PKS biosynthetic pathway - Form 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 100 mM HEPES pH 7.0, 12% PEG 8000, 50 mM CaCl2, 2 mM DTT , VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 38.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.507 α = 90 b = 94.648 β = 90.55 c = 63.174 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 300 mm plate 2007-08-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 0.97942, 0.97959, 0.95446 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.8 0.115 10.5 3.6 86174 39950
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 87.5 0.54 1.5 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 50 39950 2126 97.69 0.1735 0.17192 0.1709 0.20241 0.1989 RANDOM 19.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 0.13 -0.45 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.964 r_dihedral_angle_4_deg 15.235 r_dihedral_angle_3_deg 13.794 r_scangle_it 6.819 r_dihedral_angle_1_deg 5.117 r_scbond_it 4.784 r_mcangle_it 3.917 r_mcbond_it 3.385 r_angle_refined_deg 1.199 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.964 r_dihedral_angle_4_deg 15.235 r_dihedral_angle_3_deg 13.794 r_scangle_it 6.819 r_dihedral_angle_1_deg 5.117 r_scbond_it 4.784 r_mcangle_it 3.917 r_mcbond_it 3.385 r_angle_refined_deg 1.199 r_nbtor_refined 0.303 r_nbd_refined 0.201 r_symmetry_vdw_refined 0.174 r_xyhbond_nbd_refined 0.131 r_symmetry_hbond_refined 0.128 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3810 Nucleic Acid Atoms Solvent Atoms 481 Heterogen Atoms 2
Software Software Software Name Purpose Blu-Ice data collection SOLVE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling