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Protein kinase CK2 in complex with the inhibitor Quinalizarin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 20% PEG 4000, 200mM Na-acetate, 100mM Na-HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.42 49.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.743 α = 90 b = 61.078 β = 103.01 c = 44.797 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2007-11-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9340 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 69.541 95.4 0.05 0.05 12.2 3.1 16853 15986 27.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.42 95.3 0.153 0.153 5 3.1 2321
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION Rigid body in an isomorphous cell THROUGHOUT 2.3 69.5 16853 15986 804 94.87 0.186 0.183 0.1976 0.235 0.2489 RANDOM 16.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.38 -0.73 2.85 -1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.301 r_dihedral_angle_4_deg 20.332 r_dihedral_angle_3_deg 15.27 r_dihedral_angle_1_deg 12.827 r_scangle_it 1.495 r_angle_refined_deg 1.082 r_scbond_it 0.934 r_mcangle_it 0.622 r_mcbond_it 0.364 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.301 r_dihedral_angle_4_deg 20.332 r_dihedral_angle_3_deg 15.27 r_dihedral_angle_1_deg 12.827 r_scangle_it 1.495 r_angle_refined_deg 1.082 r_scbond_it 0.934 r_mcangle_it 0.622 r_mcbond_it 0.364 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.2 r_nbd_refined 0.188 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.131 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2714 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 20
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction