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AmpC K67R mutant apo structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KE4 PDB ID 1KE4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.7 293 Potassium Phosphate, pH 8.7, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.348 α = 90 b = 76.564 β = 115.82 c = 97.702 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2006-07-25 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.498 88.05 95.7 0.051 16.662 2.5 120185 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.498 1.55 90.9 0.513 2.3 11287
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ID 1KE4 1.498 88.05 120176 6055 95.5 0.167 0.166 0.1642 0.199 0.1982 RANDOM 18.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 0.7 -0.51 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.705 r_dihedral_angle_4_deg 14.575 r_dihedral_angle_3_deg 12.903 r_dihedral_angle_1_deg 5.733 r_sphericity_free 3.319 r_scangle_it 2.853 r_sphericity_bonded 2.268 r_scbond_it 2.131 r_rigid_bond_restr 1.62 r_mcangle_it 1.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.705 r_dihedral_angle_4_deg 14.575 r_dihedral_angle_3_deg 12.903 r_dihedral_angle_1_deg 5.733 r_sphericity_free 3.319 r_scangle_it 2.853 r_sphericity_bonded 2.268 r_scbond_it 2.131 r_rigid_bond_restr 1.62 r_mcangle_it 1.299 r_angle_refined_deg 1.236 r_mcbond_it 0.783 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.146 r_symmetry_hbond_refined 0.114 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5889 Nucleic Acid Atoms Solvent Atoms 949 Heterogen Atoms 16
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing